#include "neato.h"
#include "stress.h"
#include <time.h>
#include <unistd.h>

Include dependency graph for stuff.c:

Defines
#define	Msub(i, j) M[(i)*Ndim+(j)]
Functions
double	fpow32 (double x)
double	distvec (double p0, double p1, double *vec)
double **	new_array (int m, int n, double ival)
void	free_array (double **rv)
int	scan_graph_mode (graph_t *G, int mode)
int	scan_graph (graph_t *g)
void	free_scan_graph (graph_t *g)
void	jitter_d (node_t *np, int nG, int n)
void	jitter3d (node_t *np, int nG)
void	randompos (node_t *np, int nG)
void	initial_positions (graph_t *G, int nG)
void	diffeq_model (graph_t *G, int nG)
void	solve_model (graph_t *G, int nG)
void	update_arrays (graph_t *G, int nG, int i)
void	D2E (graph_t G, int nG, int n, double M)
void	final_energy (graph_t *G, int nG)
node_t *	choose_node (graph_t *G, int nG)
void	move_node (graph_t G, int nG, node_t n)
void	heapup (node_t *v)
void	heapdown (node_t *v)
void	neato_enqueue (node_t *v)
node_t *	neato_dequeue (void)
void	shortest_path (graph_t *G, int nG)
void	s1 (graph_t G, node_t node)
void	make_spring (graph_t G, node_t u, node_t *v, double f)
int	allow_edits (int nsec)

Define Documentation

#define Msub	(	i,
		j
	)	M[(i)*Ndim+(j)]

Definition at line 494 of file stuff.c.

Referenced by D2E().

Function Documentation

int allow_edits ( int nsec )

Definition at line 751 of file stuff.c.

References TRUE, NULL, FALSE, diffeq_model(), agerr(), and AGERR.

node_t* choose_node	(	graph_t *	G,
		int	nG
	)

Definition at line 535 of file stuff.c.

References max, MAXDOUBLE, GD_move, MaxIter, NULL, GD_neato_nlist, ND_pinned, P_SET, Ndim, GD_sum_t, and Verbose.

Referenced by solve_model().

void D2E	(	graph_t *	G,
		int	nG,
		int	n,
		double *	M
	)

Definition at line 495 of file stuff.c.

References MAXDIM, GD_spring, GD_dist, GD_neato_nlist, Ndim, Msub, ND_pos, and fpow32().

Referenced by move_node().

void diffeq_model	(	graph_t *	G,
		int	nG
	)

Definition at line 372 of file stuff.c.

References dist(), MAXDIM, Verbose, start_timer(), GD_spring, GD_dist, Spring_coeff, agfindedge(), GD_neato_nlist, ED_factor, Ndim, GD_sum_t, distvec(), ND_pos, GD_t, and elapsed_sec().

Referenced by allow_edits().

double distvec	(	double *	p0,
		double *	p1,
		double *	vec
	)

Definition at line 35 of file stuff.c.

References dist(), and Ndim.

Referenced by diffeq_model(), and update_arrays().

void final_energy	(	graph_t *	G,
		int	nG
	)

Definition at line 529 of file stuff.c.

References GD_move.

double fpow32 ( double x )

Definition at line 29 of file stuff.c.

Referenced by D2E().

void free_array ( double ** rv )

Definition at line 65 of file stuff.c.

References free().

Referenced by circuit_model(), lu_decompose(), circuitModel(), and free_scan_graph().

void free_scan_graph ( graph_t * g )

Definition at line 316 of file stuff.c.

References free(), GD_neato_nlist, Nop, free_array(), GD_dist, GD_spring, GD_sum_t, GD_t, and NULL.

Referenced by user_pos(), and neato_layout().

void heapdown ( node_t * v )

Definition at line 637 of file stuff.c.

References left, right, ND_heapindex, and ND_dist.

Referenced by neato_dequeue().

void heapup ( node_t * v )

Definition at line 620 of file stuff.c.

References ND_heapindex, and ND_dist.

Referenced by neato_enqueue(), and s1().

void initial_positions	(	graph_t *	G,
		int	nG
	)

Definition at line 348 of file stuff.c.

References Verbose, checkStart(), INIT_RANDOM, INIT_REGULAR, INIT_SELF, agerr(), AGWARN, GD_neato_nlist, hasPos, and randompos().

void jitter3d	(	node_t *	np,
		int	nG
	)

Definition at line 335 of file stuff.c.

References jitter_d().

Referenced by user_pos(), and randompos().

void jitter_d	(	node_t *	np,
		int	nG,
		int	n
	)

Definition at line 328 of file stuff.c.

References Ndim, ND_pos, and drand48().

Referenced by user_pos(), and jitter3d().

void make_spring	(	graph_t *	G,
		node_t *	u,
		node_t *	v,
		double	f
	)

Definition at line 742 of file stuff.c.

References ND_id, and GD_dist.

Referenced by s1().

void move_node	(	graph_t *	G,
		int	nG,
		node_t *	n
	)

Definition at line 589 of file stuff.c.

References MAXDIM, ND_id, ALLOC, Ndim, D2E(), GD_sum_t, solve(), Damping, drand48(), ND_pos, GD_move, update_arrays(), test_toggle(), and agnameof.

Referenced by solve_model().

node_t* neato_dequeue ( void )

Definition at line 673 of file stuff.c.

References NULL, ND_heapindex, and heapdown().

Referenced by s1().

void neato_enqueue ( node_t * v )

Definition at line 661 of file stuff.c.

References assert, ND_heapindex, and heapup().

Referenced by s1().

double** new_array	(	int	m,
		int	n,
		double	ival
	)

Definition at line 48 of file stuff.c.

References N_NEW.

Referenced by circuit_model(), lu_decompose(), circuitModel(), and scan_graph_mode().

void randompos	(	node_t *	np,
		int	nG
	)

Definition at line 340 of file stuff.c.

References ND_pos, drand48(), Ndim, and jitter3d().

Referenced by initial_positions().

void s1	(	graph_t *	G,
		node_t *	node
	)

Definition at line 708 of file stuff.c.

References GD_neato_nlist, ND_dist, Initial_dist, node(), ND_hops, neato_enqueue(), neato_dequeue(), make_spring(), agfstedge(), agnxtedge(), agtail, aghead, ED_dist, ND_heapindex, and heapup().

Referenced by bisect(), clip_line(), shortest_path(), and directVis().

int scan_graph ( graph_t * g )

Definition at line 311 of file stuff.c.

References scan_graph_mode(), and MODE_KK.

Referenced by init_nop().

int scan_graph_mode	(	graph_t *	G,
		int	mode
	)

Definition at line 232 of file stuff.c.

References str, Verbose, agnameof, agnnodes(), Reduce, agfstnode(), agnxtnode(), agdelete(), Agraph_t::root, agnedges(), agattr(), AGEDGE, agindex(), Agraph_t::proto, Agproto_t::e, MODE_KK, Epsilon, getdouble(), agget(), Damping, GD_neato_nlist, N_NEW, ND_id, ND_heapindex, DFLT_TOLERANCE, Initial_dist, MAX, Nop, GD_dist, new_array(), GD_spring, GD_sum_t, Ndim, and GD_t.

Referenced by scan_graph().

void shortest_path	(	graph_t *	G,
		int	nG
	)

Definition at line 691 of file stuff.c.

References N_NEW, Verbose, start_timer(), agfstnode(), agnxtnode(), s1(), elapsed_sec(), and free().

void solve_model	(	graph_t *	G,
		int	nG
	)

Definition at line 447 of file stuff.c.

References Epsilon, choose_node(), move_node(), Verbose, GD_move, MaxIter, elapsed_sec(), agerr(), AGWARN, and agnameof.

void update_arrays	(	graph_t *	G,
		int	nG,
		int	i
	)

Definition at line 467 of file stuff.c.

References MAXDIM, dist(), GD_neato_nlist, Ndim, GD_sum_t, distvec(), ND_pos, GD_t, GD_spring, and GD_dist.

Referenced by move_node().

Defines

Functions

Define Documentation

Function Documentation