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IDProjectCategoryView StatusDate SubmittedLast Update
0002597graphvizDotpublic2016-05-10 15:282016-05-10 18:58
Reporterball 
Assigned To 
PrioritynormalSeveritymajorReproducibilityalways
StatusnewResolutionopen 
PlatformlinuxOSOS Version
Summary0002597: newrank causes "Warning: Unable to reclaim box space in spline routing for edge" error
Descriptionnewrank under certain circumstances which I have been unable to predict causes dot to become very confused and unusable. I have tried hard to create a simple example that causes the error to no avail. I do have a complex example which if I remove some portion of which will pass. What is odd is I can remove different parts and it will pass, but there is no pattern I can discern.
Steps To ReproduceRun my dot with dot -Tcanon or whatever.

One way to avoid the error is to comment out line 10 and 68, both of which merely define edges. Another way is to comment out line 85 which defines a cross-cluster rank. Removing a bunch of sub-clusters which aren't associated with any edges also seems to work for whatever reason.

I know of no work-around and as such I really need a solution to this problem!
Additional InformationUsing version 2.38.0 on linux
TagsNo tags attached.
AUXILLARY-FILES
DATE-FIXED
FIX-COMMENT
FORMER-ID
INPUT-FILE
OUTPUT-FILE
STATUS-COMMENT
VERSION
Attached Filesdot file icon bad.dot (Attachment missing)

- Relationships

-  Notes
User avatar (0001052)
ball (reporter)
2016-05-10 15:29

I probably should have marked this as "crash" as I do get a segmentation fault
User avatar (0001053)
ball (reporter)
2016-05-10 16:22

Backtrace:


Warning: Unable to reclaim box space in spline routing for edge "+15412362468" -> "thisExtension". Something is probably seriously wrong.
Warning: Unable to reclaim box space in spline routing for edge "thisExtension" -> "actionstart". Something is probably seriously wrong.
*** glibc detected *** dot: free(): invalid next size (fast): 0x000000000178ebc0 ***
======= Backtrace: =========
/lib64/libc.so.6(+0x75f4e)[0x7f2e419b4f4e]
/lib64/libc.so.6(+0x78cf0)[0x7f2e419b7cf0]
/usr/lib64/libgvc.so.6(+0x474e6)[0x7f2e42e0e4e6]
/usr/lib64/graphviz/libgvplugin_dot_layout.so.6(+0x1bc15)[0x7f2e4130ac15]
/usr/lib64/graphviz/libgvplugin_dot_layout.so.6(+0x1f721)[0x7f2e4130e721]
/usr/lib64/graphviz/libgvplugin_dot_layout.so.6(+0x1c8e0)[0x7f2e4130b8e0]
/usr/lib64/graphviz/libgvplugin_dot_layout.so.6(+0xc82d)[0x7f2e412fb82d]
/usr/lib64/graphviz/libgvplugin_dot_layout.so.6(dot_layout+0x335)[0x7f2e412fbd05]
/usr/lib64/libgvc.so.6(gvLayoutJobs+0xd8)[0x7f2e42dea068]
dot[0x401012]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x7f2e4195dd5d]
dot[0x400cb9]
======= Memory map: ========
00400000-00402000 r-xp 00000000 08:02 401802 /usr/bin/dot
00601000-00602000 rw-p 00001000 08:02 401802 /usr/bin/dot
0174f000-017b2000 rw-p 00000000 00:00 0 [heap]
7f2e3c000000-7f2e3c021000 rw-p 00000000 00:00 0
7f2e3c021000-7f2e40000000 ---p 00000000 00:00 0
7f2e410d9000-7f2e410ef000 r-xp 00000000 08:02 1310722 /lib64/libgcc_s-4.4.7-20120601.so.1
7f2e410ef000-7f2e412ee000 ---p 00016000 08:02 1310722 /lib64/libgcc_s-4.4.7-20120601.so.1
7f2e412ee000-7f2e412ef000 rw-p 00015000 08:02 1310722 /lib64/libgcc_s-4.4.7-20120601.so.1
7f2e412ef000-7f2e41315000 r-xp 00000000 08:02 527758 /usr/lib64/graphviz/libgvplugin_dot_layout.so.6.0.0
7f2e41315000-7f2e41514000 ---p 00026000 08:02 527758 /usr/lib64/graphviz/libgvplugin_dot_layout.so.6.0.0
7f2e41514000-7f2e41515000 rw-p 00025000 08:02 527758 /usr/lib64/graphviz/libgvplugin_dot_layout.so.6.0.0
7f2e41515000-7f2e4151d000 rw-p 00000000 00:00 0
7f2e4151d000-7f2e41537000 r-xp 00000000 08:02 527756 /usr/lib64/graphviz/libgvplugin_core.so.6.0.0
7f2e41537000-7f2e41736000 ---p 0001a000 08:02 527756 /usr/lib64/graphviz/libgvplugin_core.so.6.0.0
7f2e41736000-7f2e4173a000 rw-p 00019000 08:02 527756 /usr/lib64/graphviz/libgvplugin_core.so.6.0.0
7f2e4173a000-7f2e4173b000 rw-p 00000000 00:00 0
7f2e4173b000-7f2e4173d000 r-xp 00000000 08:02 1310741 /lib64/libdl-2.12.so
7f2e4173d000-7f2e4193d000 ---p 00002000 08:02 1310741 /lib64/libdl-2.12.so
7f2e4193d000-7f2e4193e000 r--p 00002000 08:02 1310741 /lib64/libdl-2.12.so
7f2e4193e000-7f2e4193f000 rw-p 00003000 08:02 1310741 /lib64/libdl-2.12.so
7f2e4193f000-7f2e41ac9000 r-xp 00000000 08:02 1310735 /lib64/libc-2.12.so
7f2e41ac9000-7f2e41cc9000 ---p 0018a000 08:02 1310735 /lib64/libc-2.12.so
7f2e41cc9000-7f2e41ccd000 r--p 0018a000 08:02 1310735 /lib64/libc-2.12.so
7f2e41ccd000-7f2e41cce000 rw-p 0018e000 08:02 1310735 /lib64/libc-2.12.so
7f2e41cce000-7f2e41cd3000 rw-p 00000000 00:00 0
7f2e41cd3000-7f2e41cd9000 r-xp 00000000 08:02 401767 /usr/lib64/libcdt.so.5.0.0
7f2e41cd9000-7f2e41ed8000 ---p 00006000 08:02 401767 /usr/lib64/libcdt.so.5.0.0
7f2e41ed8000-7f2e41ed9000 rw-p 00005000 08:02 401767 /usr/lib64/libcdt.so.5.0.0
7f2e41ed9000-7f2e41f5c000 r-xp 00000000 08:02 1310743 /lib64/libm-2.12.so
7f2e41f5c000-7f2e4215b000 ---p 00083000 08:02 1310743 /lib64/libm-2.12.so
7f2e4215b000-7f2e4215c000 r--p 00082000 08:02 1310743 /lib64/libm-2.12.so
7f2e4215c000-7f2e4215d000 rw-p 00083000 08:02 1310743 /lib64/libm-2.12.so
7f2e4215d000-7f2e42172000 r-xp 00000000 08:02 1310786 /lib64/libz.so.1.2.3
7f2e42172000-7f2e42371000 ---p 00015000 08:02 1310786 /lib64/libz.so.1.2.3
7f2e42371000-7f2e42372000 r--p 00014000 08:02 1310786 /lib64/libz.so.1.2.3
7f2e42372000-7f2e42373000 rw-p 00015000 08:02 1310786 /lib64/libz.so.1.2.3
7f2e42373000-7f2e42399000 r-xp 00000000 08:02 1310822 /lib64/libexpat.so.1.5.2
7f2e42399000-7f2e42598000 ---p 00026000 08:02 1310822 /lib64/libexpat.so.1.5.2
7f2e42598000-7f2e4259b000 rw-p 00025000 08:02 1310822 /lib64/libexpat.so.1.5.2
7f2e4259b000-7f2e425a2000 r-xp 00000000 08:02 401775 /usr/lib64/libpathplan.so.4.0.0
7f2e425a2000-7f2e427a2000 ---p 00007000 08:02 401775 /usr/lib64/libpathplan.so.4.0.0
7f2e427a2000-7f2e427a3000 rw-p 00007000 08:02 401775 /usr/lib64/libpathplan.so.4.0.0
7f2e427a3000-7f2e427b8000 r-xp 00000000 08:02 401769 /usr/lib64/libcgraph.so.6.0.0
7f2e427b8000-7f2e429b7000 ---p 00015000 08:02 401769 /usr/lib64/libcgraph.so.6.0.0
7f2e429b7000-7f2e429b9000 rw-p 00014000 08:02 401769 /usr/lib64/libcgraph.so.6.0.0
7f2e429b9000-7f2e429bd000 r-xp 00000000 08:02 401777 /usr/lib64/libxdot.so.4.0.0
7f2e429bd000-7f2e42bbd000 ---p 00004000 08:02 401777 /usr/lib64/libxdot.so.4.0.0
7f2e42bbd000-7f2e42bbe000 rw-p 00004000 08:02 401777 /usr/lib64/libxdot.so.4.0.0
7f2e42bbe000-7f2e42bc7000 r-xp 00000000 08:02 401765 /usr/lib64/libltdl.so.7.2.1
7f2e42bc7000-7f2e42dc6000 ---p 00009000 08:02 401765 /usr/lib64/libltdl.so.7.2.1
7f2e42dc6000-7f2e42dc7000 rw-p 00008000 08:02 401765 /usr/lib64/libltdl.so.7.2.1
7f2e42dc7000-7f2e42e54000 r-xp 00000000 08:02 401771 /usr/lib64/libgvc.so.6.0.0
7f2e42e54000-7f2e43054000 ---p 0008d000 08:02 401771 /usr/lib64/libgvc.so.6.0.0
7f2e43054000-7f2e43065000 rw-p 0008d000 08:02 401771 /usr/lib64/libgvc.so.6.0.0
7f2e43065000-7f2e43066000 rw-p 00000000 00:00 0
7f2e43066000-7f2e43086000 r-xp 00000000 08:02 1311126 /lib64/ld-2.12.so
7f2e43273000-7f2e43279000 rw-p 00000000 00:00 0
7f2e43282000-7f2e43285000 rw-p 00000000 00:00 0 [1] 4585 abort dot -Tcanon > /dev/null <<<''
User avatar (0001054)
ball (reporter)
2016-05-10 16:59

Note: I've attempted to compile dot - graphviz version 2.39.20160508.1846 (20160508.1846)

It compiles and appears to work on Mac OS X, however when I compile it on Centos (linux), it fails to have any -T options:

cmd/dot/dot ~/test.dot -Tsvg
Format: "svg" not recognized. Use one of:

Meanwhile the Mac version works as expected:

cmd/dot/dot -Tblah
Format: "blah" not recognized. Use one of: bmp canon cgimage cmap cmapx cmapx_np dot eps exr fig gif gv icns ico imap imap_np ismap jp2 jpe jpeg jpg pct pdf pic pict plain plain-ext png pov ps ps2 psd sgi svg svgz tga tif tiff tk vml vmlz xdot xdot1.2 xdot1.4

I'm thinking I'm missing a dev package somewhere. Here is my configure output for linux:

./configure
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking for library containing strerror... none required
checking for flex... no
checking for lex... no
checking for bison... bison -y
checking for gawk... (cached) gawk
checking for a BSD-compatible install... /usr/bin/install -c
checking whether ln -s works... yes
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1966080
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gsed... /bin/sed
checking for gsort... no
checking for sort... sort
checking for egrep... /bin/grep -E
checking for groff... groff
checking for ps2pdf... ps2pdf
checking for pstopdf... (cached) ps2pdf
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for tclsh8.6... no
checking for tclsh8.5... no
checking for tclsh8.4... no
checking for tclsh8.3... no
checking for tclsh... no
checking whether gcc and cc understand -c and -o together... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking dependency style of g++... (cached) gcc3
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... no
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for gcc... gcc
checking whether we are using the GNU Objective C compiler... no
checking whether gcc accepts -g... no
checking dependency style of gcc... gcc3
checking for inline... inline
checking for windres... no
checking for x86_64-unknown-linux-gnu-windres... no
checking for an ANSI C-conforming const... yes
checking for mode_t... yes
checking for pid_t... yes
checking for size_t... yes
checking for ssize_t... yes
checking for uid_t in sys/types.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stddef.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for stdint.h... (cached) yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking search.h usability... yes
checking search.h presence... yes
checking for search.h... yes
checking getopt.h usability... yes
checking getopt.h presence... yes
checking for getopt.h... yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking values.h usability... yes
checking values.h presence... yes
checking for values.h... yes
checking float.h usability... yes
checking float.h presence... yes
checking for float.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking termios.h usability... yes
checking termios.h presence... yes
checking for termios.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking time.h usability... yes
checking time.h presence... yes
checking for time.h... yes
checking for unistd.h... (cached) yes
checking fenv.h usability... yes
checking fenv.h presence... yes
checking for fenv.h... yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking for inttypes.h... (cached) yes
checking setjmp.h usability... yes
checking setjmp.h presence... yes
checking for setjmp.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking sys/times.h usability... yes
checking sys/times.h presence... yes
checking for sys/times.h... yes
checking for sys/types.h... (cached) yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking fpu_control.h usability... yes
checking fpu_control.h presence... yes
checking for fpu_control.h... yes
checking sys/fpu.h usability... no
checking sys/fpu.h presence... no
checking for sys/fpu.h... no
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for sys/stat.h... (cached) yes
checking sys/mman.h usability... yes
checking sys/mman.h presence... yes
checking for sys/mman.h... yes
checking sys/ioctl.h usability... yes
checking sys/ioctl.h presence... yes
checking for sys/ioctl.h... yes
checking sys/inotify.h usability... yes
checking sys/inotify.h presence... yes
checking for sys/inotify.h... yes
checking langinfo.h usability... yes
checking langinfo.h presence... yes
checking for langinfo.h... yes
checking libintl.h usability... yes
checking libintl.h presence... yes
checking for libintl.h... yes
checking crt_externs.h usability... no
checking crt_externs.h presence... no
checking for crt_externs.h... no
checking whether time.h and sys/time.h may both be included... yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for socklen_t... yes
checking for bool... no
checking for struct dioattr... no
checking for main in -lm... yes
checking for feenableexcept... yes
checking for fesetenv... yes
checking for log2... yes
checking for sincos... yes
checking libgen.h usability... yes
checking libgen.h presence... yes
checking for libgen.h... yes
checking for basename in -lgen... no
checking for working alloca.h... yes
checking for alloca... yes
checking for lrand48... yes
checking for drand48... yes
checking for srand48... yes
checking for setmode... no
checking for setenv... yes
checking for getenv... yes
checking for __freadable... yes
checking for _sysconf... no
checking for getrusage... yes
checking for strerror... yes
checking for cbrt... no
checking for lsqrt... no
checking for vsnprintf... yes
checking for strtoul... yes
checking for strtoll... yes
checking for strtoull... yes
checking for uname... yes
checking for memset... yes
checking for nl_langinfo... yes
checking for pow... no
checking for sqrt... no
checking for strchr... yes
checking for strdup... yes
checking for strerror... (cached) yes
checking for strstr... yes
checking for _NSGetEnviron... no
checking for strcasecmp... yes
checking for strncasecmp... yes
checking for strcasestr... yes
checking which extension is used for runtime loadable modules... .so
checking which variable specifies run-time module search path... LD_LIBRARY_PATH
checking for the default library search path... /lib64 /usr/lib64 /lib /usr/lib /usr/lib64/mysql
checking for library containing dlopen... -ldl
checking for dlerror... yes
checking for shl_load... no
checking for shl_load in -ldld... no
checking for dld_link in -ldld... no
checking for _ prefix in compiled symbols... no
checking whether deplibs are loaded by dlopen... yes
checking for argz.h... yes
checking for error_t... yes
checking for argz_add... yes
checking for argz_append... yes
checking for argz_count... yes
checking for argz_create_sep... yes
checking for argz_insert... yes
checking for argz_next... yes
checking for argz_stringify... yes
checking if argz actually works... yes
checking whether libtool supports -dlopen/-dlpreopen... yes
checking for ltdl.h... no
checking where to find libltdl headers... -I${top_srcdir}/libltdl
checking where to find libltdl library... ${top_build_prefix}libltdl/libltdlc.la
checking for unistd.h... (cached) yes
checking for dl.h... no
checking for sys/dl.h... no
checking for dld.h... no
checking for mach-o/dyld.h... no
checking for dirent.h... yes
checking for closedir... yes
checking for opendir... yes
checking for readdir... yes
checking for strlcat... no
checking for strlcpy... no
checking for X... no
configure: WARNING: X11 not available.
checking for swig... no
checking tcl.h usability... no
checking tcl.h presence... no
checking for tcl.h... no
configure: WARNING: Unable to find header tcl.h. The Tcl packages will not be built
checking for connect... yes
checking for gethostbyname... yes
checking for expat-config... no
checking expat.h usability... no
checking expat.h presence... no
checking for expat.h... no
configure: WARNING: Optional expat library not available - missing headers
checking for main in -lexpat... no
configure: WARNING: Optional expat library not available
checking IL/il.h usability... no
checking IL/il.h presence... no
checking for IL/il.h... no
configure: WARNING: Optional DevIL library not available - missing headers
checking for main in -lIL... no
configure: WARNING: Optional DevIL library not available
checking for main in -lXpm... no
configure: WARNING: Optional Xpm library not available
checking X11/Intrinsic.h usability... no
checking X11/Intrinsic.h presence... no
checking for X11/Intrinsic.h... no
checking for X11/Xaw/Text.h... no
configure: WARNING: Optional Xaw library not available - missing headers
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for main in -lz... yes
checking for deflateBound... yes
checking for POPPLER... no
checking for RSVG... no
checking for SVG_2_36... no
checking for PANGOCAIRO... no
checking for FREETYPE2... no
configure: WARNING: pkg-config did not find a freetype2.pc. Looking for freetype-config.
checking for freetype-config... no
configure: WARNING: freetype library not available
checking for FONTCONFIG... no
configure: WARNING: pkg-config did not find a fontconfig.pc. Looking for fontconfig-config.
checking for fontconfig-config... no
configure: WARNING: fontconfig library not available
checking for GDK... no
checking for GDK_PIXBUF... no
checking for GTK... no
checking for GTKGL... no
checking for GTKGLEXT... no
checking for GTS... no
checking for ANN... no
checking for GLADE... no
checking for qmake-qt4... no
checking for qmake-qt3... no
checking for qmake... no
checking for gdlib-config... no
configure: WARNING: GD gdlib-config not found
checking gd.h usability... no
checking gd.h presence... no
checking for gd.h... no
configure: WARNING: Optional GD library not available - no gd.h
checking GL/glut.h usability... no
checking GL/glut.h presence... no
checking for GL/glut.h... no
configure: WARNING: Optional glut library not available - no GL/glut.h
checking if FILE struct contains _cnt... no
checking if FILE struct contains _r... no
checking if FILE struct contains _next... no
checking if FILE struct contains _IO_read_end... yes
checking if errno externs are declared... yes
checking if getopt externs are declared... yes
checking if intptr_t is declared... yes
checking if assert needs __eprintf... no
checking size of long long... 8
checking size of int... 4
configure: creating ./config.status
config.status: creating Makefile
config.status: creating debian/changelog
config.status: creating doc/Makefile
config.status: creating doc/info/Makefile
config.status: creating doc/schema/Makefile
config.status: creating contrib/Makefile
config.status: creating contrib/prune/Makefile
config.status: creating contrib/diffimg/Makefile
config.status: creating graphs/Makefile
config.status: creating graphs/directed/Makefile
config.status: creating graphs/undirected/Makefile
config.status: creating lib/Makefile
config.status: creating lib/cdt/Makefile
config.status: creating lib/cdt/libcdt.pc
config.status: creating lib/cgraph/Makefile
config.status: creating lib/cgraph/libcgraph.pc
config.status: creating lib/rbtree/Makefile
config.status: creating lib/pathplan/Makefile
config.status: creating lib/pathplan/libpathplan.pc
config.status: creating lib/ast/Makefile
config.status: creating lib/sfio/Makefile
config.status: creating lib/sfio/Sfio_f/Makefile
config.status: creating lib/vmalloc/Makefile
config.status: creating lib/dotgen/Makefile
config.status: creating lib/neatogen/Makefile
config.status: creating lib/fdpgen/Makefile
config.status: creating lib/sparse/Makefile
config.status: creating lib/mingle/Makefile
config.status: creating lib/label/Makefile
config.status: creating lib/sfdpgen/Makefile
config.status: creating lib/sfdpgen/libsfdp.pc
config.status: creating lib/osage/Makefile
config.status: creating lib/edgepaint/Makefile
config.status: creating lib/edgepaint/liblab_gamut.pc
config.status: creating lib/gvpr/Makefile
config.status: creating lib/gvpr/libgvpr.pc
config.status: creating lib/circogen/Makefile
config.status: creating lib/twopigen/Makefile
config.status: creating lib/patchwork/Makefile
config.status: creating lib/pack/Makefile
config.status: creating lib/ortho/Makefile
config.status: creating lib/expr/Makefile
config.status: creating lib/expr/libexpr.pc
config.status: creating lib/common/Makefile
config.status: creating lib/ingraphs/Makefile
config.status: creating lib/vpsc/Makefile
config.status: creating lib/gvc/Makefile
config.status: creating lib/gvc/libgvc.pc
config.status: creating lib/xdot/Makefile
config.status: creating lib/xdot/libxdot.pc
config.status: creating lib/topfish/Makefile
config.status: creating lib/glcomp/Makefile
config.status: creating macosx/Info.plist
config.status: creating macosx/build/graphviz.pmdoc/01local.xml
config.status: creating macosx/build/graphviz.pmdoc/02graphviz.xml
config.status: creating windows/build/graphviz.wxs
config.status: creating windows/Properties/AssemblyInfo.cs
config.status: creating plugin/Makefile
config.status: creating plugin/core/Makefile
config.status: creating plugin/devil/Makefile
config.status: creating plugin/gd/Makefile
config.status: creating plugin/gdk/Makefile
config.status: creating plugin/gdiplus/Makefile
config.status: creating plugin/glitz/Makefile
config.status: creating plugin/gs/Makefile
config.status: creating plugin/gtk/Makefile
config.status: creating plugin/lasi/Makefile
config.status: creating plugin/ming/Makefile
config.status: creating plugin/pango/Makefile
config.status: creating plugin/poppler/Makefile
config.status: creating plugin/quartz/Makefile
config.status: creating plugin/rsvg/Makefile
config.status: creating plugin/visio/Makefile
config.status: creating plugin/webp/Makefile
config.status: creating plugin/xlib/Makefile
config.status: creating plugin/dot_layout/Makefile
config.status: creating plugin/neato_layout/Makefile
config.status: creating cmd/Makefile
config.status: creating cmd/dot/Makefile
config.status: creating cmd/tools/Makefile
config.status: creating cmd/gvpr/Makefile
config.status: creating cmd/gvpr/lib/Makefile
config.status: creating cmd/lefty/ws/x11/libfilereq/Makefile
config.status: creating cmd/lefty/ws/x11/Makefile
config.status: creating cmd/lefty/ws/mswin32/Makefile
config.status: creating cmd/lefty/ws/Makefile
config.status: creating cmd/lefty/os/unix/Makefile
config.status: creating cmd/lefty/os/mswin32/Makefile
config.status: creating cmd/lefty/os/Makefile
config.status: creating cmd/lefty/dot2l/Makefile
config.status: creating cmd/lefty/examples/Makefile
config.status: creating cmd/lefty/Makefile
config.status: creating cmd/lneato/Makefile
config.status: creating cmd/dotty/Makefile
config.status: creating cmd/smyrna/Makefile
config.status: creating cmd/gvmap/Makefile
config.status: creating cmd/mingle/Makefile
config.status: creating cmd/edgepaint/Makefile
config.status: creating cmd/gvedit/Makefile
config.status: creating cmd/gvedit/gvedit.pro
config.status: creating cmd/gvedit/ui/Makefile
config.status: creating cmd/gvedit/images/Makefile
config.status: creating tclpkg/Makefile
config.status: creating tclpkg/tclstubs/Makefile
config.status: creating tclpkg/tclhandle/Makefile
config.status: creating tclpkg/gdtclft/Makefile
config.status: creating tclpkg/gdtclft/demo/Makefile
config.status: creating tclpkg/tcldot/Makefile
config.status: creating tclpkg/tcldot/demo/Makefile
config.status: creating tclpkg/tclpathplan/Makefile
config.status: creating tclpkg/tclpathplan/demo/Makefile
config.status: creating tclpkg/tclpathplan/demo/pathplan_data/Makefile
config.status: creating tclpkg/gv/Makefile
config.status: creating tclpkg/gv/demo/Makefile
config.status: creating tclpkg/gv/META.gv
config.status: creating rtest/Makefile
config.status: creating share/Makefile
config.status: creating share/examples/Makefile
config.status: creating share/gui/Makefile
config.status: creating graphviz.spec
config.status: creating Doxyfile
config.status: creating config.h
config.status: config.h is unchanged
config.status: creating lib/common/types.h
config.status: lib/common/types.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
=== configuring in libltdl (/home/paul.bayley/graphviz-2.39.20160508.1846/libltdl)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local' '--enable-ltdl-convenience' --cache-file=/dev/null --srcdir=.
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for style of include used by make... GNU
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1966080
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for shl_load... no
checking for shl_load in -ldld... no
checking for dlopen... no
checking for dlopen in -ldl... yes
checking whether a program can dlopen itself... yes
checking whether a statically linked program can dlopen itself... yes
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking which extension is used for runtime loadable modules... .so
checking which variable specifies run-time module search path... LD_LIBRARY_PATH
checking for the default library search path... /lib64 /usr/lib64 /lib /usr/lib /usr/lib64/mysql
checking for library containing dlopen... -ldl
checking for dlerror... yes
checking for shl_load... (cached) no
checking for shl_load in -ldld... (cached) no
checking for dld_link in -ldld... no
checking for _ prefix in compiled symbols... no
checking whether deplibs are loaded by dlopen... yes
checking for argz.h... yes
checking for error_t... yes
checking for argz_add... yes
checking for argz_append... yes
checking for argz_count... yes
checking for argz_create_sep... yes
checking for argz_insert... yes
checking for argz_next... yes
checking for argz_stringify... yes
checking if argz actually works... yes
checking whether libtool supports -dlopen/-dlpreopen... yes
checking for unistd.h... (cached) yes
checking for dl.h... no
checking for sys/dl.h... no
checking for dld.h... no
checking for mach-o/dyld.h... no
checking for dirent.h... yes
checking for closedir... yes
checking for opendir... yes
checking for readdir... yes
checking for strlcat... no
checking for strlcpy... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
config.status: config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands

----------------------------------------------------------------

graphviz-2.39.20160508.1846 will be compiled with the following:

options:
  cgraph:
  digcola: Yes
  expat: No (missing library)
  fontconfig: No (missing fontconfig-config)
  freetype: No (missing freetype-config)
  glut: No (missing GL/glut.h)
  ann: No (ANN library not available)
  gts: No (gts library not available)
  ipsepcola: No (disabled by default - C++ portability issues)
  ltdl: Yes
  ortho: Yes
  sfdp: Yes
  shared: Yes
  static: No (disabled by default)
  qt: No (qmake not found)
  x: No (disabled or unavailable)

commands:
  dot: Yes (always enabled)
  neato: Yes (always enabled)
  fdp: Yes (always enabled)
  circo: Yes (always enabled)
  twopi: Yes (always enabled)
  gvpr: Yes (always enabled)
  gvmap: Yes (always enabled)
  lefty: No (missing Xaw headers)
  smyrna: No (disabled by default - experimental)
  gvedit: No (qmake not found)

plugin libraries:
  dot_layout: Yes (always enabled)
  neato_layout: Yes (always enabled)
  core: Yes (always enabled)
  devil: No (missing library)
  gd: No (gd headers not found)
  gdiplus: No (disabled by default - Windows only)
  gdk:
  gdk_pixbuf: No (gdk_pixbuf library not available)
  ghostscript: No (missing Xrender)
  glitz: No (disabled by default - incomplete)
  gtk: No (gtk library not available)
  lasi: No (missing pangocairo support)
  ming: No (disabled by default - incomplete)
  pangocairo: No (pangocairo library not available)
  poppler: No (poppler library not available)
  quartz: No (disabled by default - Mac only)
  rsvg: No (rsvg library not available)
  visio: No (disabled by default - experimental)
  webp: No (disabled by default - experimental)
  xlib: No (disabled or unavailable)

language extensions:
  gv_sharp: No (swig not available)
  gv_go: No (disabled by default - experimental)
  gv_guile: No (swig not available)
  gv_io: No (disabled by default - no swig support yet)
  gv_java: No (swig not available)
  gv_lua: No (swig not available)
  gv_ocaml: No (swig not available)
  gv_perl: No (swig not available)
  gv_php: No (swig not available)
  gv_python: No (swig not available)
  gv_python23: No (disabled by default - for multiversion installs)
  gv_python24: No (disabled by default - for multiversion installs)
  gv_python25: No (disabled by default - for multiversion installs)
  gv_python26: No (disabled by default - for multiversion installs)
  gv_python27: No (disabled by default - for multiversion installs)
  gv_python34: No (disabled by default - for multiversion installs)
  gv_R: No (swig not available)
  gv_ruby: No (swig not available)
  gv_tcl: No (tcl not available)

  tcldot: No (tcl not available)
  tclpathplan: No (tcl not available)
  gdtclft: No (tcl not available)
User avatar (0001055)
ball (reporter)
2016-05-10 18:58

I'm now using version 2.39.20160508.1846 (20160508.1846) (from yum repo) and it appears to work. Hopefully there aren't any severe bugs in this nightly.

- Issue History
Date Modified Username Field Change
2016-05-10 15:28 ball New Issue
2016-05-10 15:28 ball File Added: bad.dot
2016-05-10 15:29 ball Note Added: 0001052
2016-05-10 16:22 ball Note Added: 0001053
2016-05-10 16:59 ball Note Added: 0001054
2016-05-10 18:58 ball Note Added: 0001055


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