dot - graphviz version 2.26.3 (on Ubuntu 11.10) does not recognize arcs from/to clusters
Submitted by ericP on Mon, 02/13/2012 - 00:57
The Undirected Graph Clusters example at fdpclust produces a disconnected graph instead of the documented output. Apparently, cluster names in arcs like "clusterC -- clusterB" are assumed to be new nodes. I had this problem in other dot files as well.
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dot - graphviz version 2.26.3
At present, fdp is the only Graphviz layout program that recognizes edges between clusters. If you run 2.26 fdp on the graph, you will get the expected output.